…'t updated during latest merge of gsl/develop.

…he gsl/MPAS_stoch_physics in the stochastic_physics repo.

…teger seed workaround.

… smoke) from "output" to "output_smoke" (and file from "history..." to "history_smoke...". This is necessary because the stream name "output" is already taken by the main output stream, and having the same name for two different output streams apparently causes SMIOL I/O errors during the forecast (and incorrect/corrupted history*.nc files).

…) no stale stream_list.atmosphere files exist in the two default_inputs directories (one under core_atmosphere and the other immediately under the MPAS-Model top-level directory), and (2) for the atmosphere core, all files (stream-related as well as namelist) in the top-level directory are backed up before new such files are copied from the default_inputs directory back up a level into the top-level directory. Previously, existing (and thus possibly outdated) stream_list.atmosphere.* files in the top-level directory were not being replaced by newer ones in default_inputs, and that was causing unexpected (and wrong) behavior. Probably a similar fix is needed for the init_atmsophere core and maybe even other ones.

…ll as its output file) so it doesn't conflict with the default output stream.

…tochastic_physics's master branh will gradually happen.

…/MPAS_stoch_physics_try_merge_stoch_master

…tochastic_physics code know that the dycore being used is MPAS.

…ill instead be defined in the Makefile for stochastic_physics only (in a separate commit into the stochastic_physics repo) since it is only needed by the stochastic_physics submodule.

…e that is now added in the Makefile in stochastic_physics).

…h_master

…s the TEMPO tables.

…c physics; clean up comments in the CI test workflow file.

…ochastic physics.

…github).

… the list of variables to output in the history*.nc files.

…ways succeed.

…r to the ones in ufscommunity.convection_permitting.gfs.winter (without the .stoch at the end).

… CI testing of convection_permitting suite since the latter uses the Thompson MP scheme. Also, remove the physics_lsm_noahmp namelist since the convection_permitting scheme doesn't need it (it uses the noah lsm, not noahmp).

…ch_master.before_merge_01

…cs with the hrrrv5 physics suite.

…ng changed to TEMPO (the Thompson scheme, which is part of convection_permitting, is being used), we need to add links to the Thompson tables. Do that here.

…ove commented-out code.